PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G0494
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 258aa    MW: 29876.2 Da    PI: 5.2654
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G0494genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.15.6e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd +l  +++++G  +W+  +++ g++R++k+c++rw +yl
      Gh_A13G0494 14 KGEWSAEEDHKLRSYIQRYGHWNWRELPKYAGLKRCGKSCRLRWMNYL 61
                     799*****************99************************97 PP

2Myb_DNA-binding582.2e-1867111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T+eEd l+++++ ++G++ W+tIa+ ++ gRt++++k++w+ +
      Gh_A13G0494  67 RGNFTEEEDALIIKLHDEMGNR-WSTIAKSFP-GRTDNEIKNHWHAH 111
                      89********************.*********.***********976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.818961IPR017930Myb domain
SuperFamilySSF466891.01E-3011108IPR009057Homeodomain-like
SMARTSM007171.4E-101363IPR001005SANT/Myb domain
PfamPF002498.7E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-231568IPR009057Homeodomain-like
CDDcd001676.61E-81661No hitNo description
PROSITE profilePS5129428.23862116IPR017930Myb domain
SMARTSM007171.0E-1766114IPR001005SANT/Myb domain
PfamPF002492.2E-1667111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-2769115IPR009057Homeodomain-like
CDDcd001671.94E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MVRAPFYDKN GMKKGEWSAE EDHKLRSYIQ RYGHWNWREL PKYAGLKRCG KSCRLRWMNY  60
LRPELKRGNF TEEEDALIIK LHDEMGNRWS TIAKSFPGRT DNEIKNHWHA HLKKRTKRDE  120
KDKSDCWQSE AIRNENICEG EGERERESNS ILVDTPNNMI LESSPLSPAT STCTEQSSFS  180
SGSGSMFSFN VVGGLEDNCL PCSGTYEAES SGDFWSQPFV ADNTSSLEKG GFEMLLEYED  240
MYHNDSAYLL YELMQGWI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-281211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012461816.11e-171PREDICTED: transcription factor MYB82-like
SwissprotP200242e-52MYB1_MAIZE; Myb-related protein Zm1
TrEMBLA0A0D2VBU51e-171A0A0D2VBU5_G
STRINGPOPTR_0019s14130.11e-80(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17768510
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.16e-54myb domain protein 14